recipe bioconductor-nxtirfdata

Data for NxtIRF

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/NxtIRFdata.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-nxtirfdata/meta.yaml

NxtIRFdata is a companion package for SpliceWiz, an interactive analysis and visualization tool for alternative splicing quantitation (including intron retention) for RNA-seq BAM files. NxtIRFdata contains Mappability files required for the generation of human and mouse references. NxtIRFdata also contains a synthetic genome reference and example BAM files used to demonstrate SpliceWiz's functionality. BAM files are based on 6 samples from the Leucegene dataset provided by NCBI Gene Expression Omnibus under accession number GSE67039.

package bioconductor-nxtirfdata

Versions:

1.4.0-0,  1.0.0-1,  1.0.0-0

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• curl

• r-base >=4.2,<4.3.0a0

• r-r.utils

Required By:

• bioconductor-nxtirfcore

• bioconductor-splicewiz

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nxtirfdata

and update with:

conda update bioconductor-nxtirfdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nxtirfdata:<tag>

(see bioconductor-nxtirfdata/tags for valid values for <tag>)

Download stats

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