- recipe bioconductor-oligo
Preprocessing tools for oligonucleotide arrays
- Homepage:
- License:
LGPL (>= 2)
- Recipe:
- Links:
biotools: oligo
A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).
- package bioconductor-oligo¶
-
- Versions:
1.62.0-0
,1.58.0-2
,1.58.0-1
,1.58.0-0
,1.56.0-0
,1.54.1-0
,1.54.0-0
,1.52.0-0
,1.50.0-0
,1.62.0-0
,1.58.0-2
,1.58.0-1
,1.58.0-0
,1.56.0-0
,1.54.1-0
,1.54.0-0
,1.52.0-0
,1.50.0-0
,1.48.0-1
,1.46.0-0
,1.44.0-0
,1.42.0-0
,1.40.2-0
,1.40.1-0
- Depends:
bioconductor-affxparser
>=1.70.0,<1.71.0
bioconductor-affyio
>=1.68.0,<1.69.0
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-oligoclasses
>=1.60.0,<1.61.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
bioconductor-zlibbioc
>=1.44.0,<1.45.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
r-dbi
>=0.3.1
r-rsqlite
>=1.0.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-oligo
and update with:
conda update bioconductor-oligo
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-oligo:<tag>
(see bioconductor-oligo/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-oligo/README.html)