Package Recipe 'bioconductor-oligo'

recipe bioconductor-oligo¶

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Homepage: https://bioconductor.org/packages/3.9/bioc/html/oligo.html
License: LGPL (>= 2)
Recipe: /bioconductor-oligo/meta.yaml
Links: biotools: oligo

package bioconductor-oligo¶

Versions: 1.46.0-0, 1.44.0-0, 1.42.0-0, 1.40.2-0, 1.40.1-0
Depends bioconductor-affxparser: >=1.54.0,<1.55.0
Depends bioconductor-affyio: >=1.52.0,<1.53.0
Depends bioconductor-biobase: >=2.42.0,<2.43.0
Depends bioconductor-biocgenerics: >=0.28.0,<0.29.0
Depends bioconductor-biostrings: >=2.50.0,<2.51.0
Depends bioconductor-oligoclasses: >=1.44.0,<1.45.0
Depends bioconductor-preprocesscore: >=1.44.0,<1.45.0
Depends bioconductor-zlibbioc: >=1.28.0,<1.29.0
Depends libgcc-ng: >=7.3.0
Depends r-base: >=3.5.1,<3.5.2.0a0
Depends r-dbi: >=0.3.1
Depends r-ff
Depends r-rsqlite: >=1.0.0
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-oligo

and update with:

conda update bioconductor-oligo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-oligo:<tag>

(see bioconductor-oligo/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-oligo/README.html)