Package Recipe 'bioconductor-oligo'

recipe bioconductor-oligo

Preprocessing tools for oligonucleotide arrays

Homepage: https://bioconductor.org/packages/3.11/bioc/html/oligo.html
License: LGPL (>= 2)
Recipe: /bioconductor-oligo/meta.yaml
Links: biotools: oligo

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

package bioconductor-oligo¶

Versions

1.52.0-0, 1.50.0-0, 1.48.0-1, 1.46.0-0, 1.44.0-0, 1.42.0-0, 1.40.2-0, 1.40.1-0

Depends

bioconductor-affxparser >=1.60.0,<1.61.0
bioconductor-affyio >=1.58.0,<1.59.0
bioconductor-biobase >=2.48.0,<2.49.0
bioconductor-biocgenerics >=0.34.0,<0.35.0
bioconductor-biostrings >=2.56.0,<2.57.0
bioconductor-oligoclasses >=1.50.0,<1.51.0
bioconductor-preprocesscore >=1.50.0,<1.51.0
bioconductor-zlibbioc >=1.34.0,<1.35.0
libblas >=3.8.0,<4.0a0
libgcc-ng >=7.3.0
liblapack >=3.8.0,<3.9.0a0
r-base >=4.0,<4.1.0a0
r-dbi >=0.3.1
r-ff
r-rsqlite >=1.0.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-oligo

and update with:

conda update bioconductor-oligo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-oligo:<tag>

(see bioconductor-oligo/tags for valid values for <tag>)

Link to this page¶

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