Package Recipe 'bioconductor-oligo'

recipe bioconductor-oligo¶

A package to analyze oligonucleotide arrays (expression/SNP/tiling/exon) at probe-level. It currently supports Affymetrix (CEL files) and NimbleGen arrays (XYS files).

Homepage: https://bioconductor.org/packages/3.9/bioc/html/oligo.html
License: LGPL (>= 2)
Recipe: /bioconductor-oligo/meta.yaml
Links: biotools: oligo

package bioconductor-oligo¶

Versions

1.48.0-1, 1.46.0-0, 1.44.0-0, 1.42.0-0, 1.40.2-0, 1.40.1-0

Depends

bioconductor-affxparser >=1.56.0,<1.57.0
bioconductor-affyio >=1.54.0,<1.55.0
bioconductor-biobase >=2.44.0,<2.45.0
bioconductor-biocgenerics >=0.30.0,<0.31.0
bioconductor-biostrings >=2.52.0,<2.53.0
bioconductor-oligoclasses >=1.46.0,<1.47.0
bioconductor-preprocesscore >=1.46.0,<1.47.0
bioconductor-zlibbioc >=1.30.0,<1.31.0
libgcc-ng >=7.3.0
r-base >=3.6,<3.7.0a0
r-dbi >=0.3.1
r-ff
r-rsqlite >=1.0.0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-oligo

and update with:

conda update bioconductor-oligo

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-oligo:<tag>

(see bioconductor-oligo/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-oligo/README.html)