recipe bioconductor-oncomix

Identifying Genes Overexpressed in Subsets of Tumors from Tumor-Normal mRNA Expression Data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/oncomix.html

License:

GPL-3

Recipe:

/bioconductor-oncomix/meta.yaml

This package helps identify mRNAs that are overexpressed in subsets of tumors relative to normal tissue. Ideal inputs would be paired tumor-normal data from the same tissue from many patients (>15 pairs). This unsupervised approach relies on the observation that oncogenes are characteristically overexpressed in only a subset of tumors in the population, and may help identify oncogene candidates purely based on differences in mRNA expression between previously unknown subtypes.

package bioconductor-oncomix

(downloads) docker_bioconductor-oncomix

Versions:

1.20.0-01.16.0-01.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-11.4.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-oncomix

and update with:

conda update bioconductor-oncomix

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-oncomix:<tag>

(see bioconductor-oncomix/tags for valid values for <tag>)

Download stats