recipe bioconductor-openprimerui

Shiny Application for Multiplex PCR Primer Design and Analysis

Homepage

https://bioconductor.org/packages/3.13/bioc/html/openPrimeRui.html

License

GPL-2

Recipe

/bioconductor-openprimerui/meta.yaml

A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.

package bioconductor-openprimerui

(downloads) docker_bioconductor-openprimerui

Versions

1.14.0-01.12.0-11.12.0-01.10.0-01.8.0-01.6.0-11.4.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-openprimerui

and update with:

conda update bioconductor-openprimerui

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-openprimerui:<tag>

(see bioconductor-openprimerui/tags for valid values for <tag>)