bioconductor-oppar

downloads

The R implementation of mCOPA package published by Wang et al. (2012). Oppar provides methods for Cancer Outlier profile Analysis. Although initially developed to detect outlier genes in cancer studies, methods presented in oppar can be used for outlier profile analysis in general. In addition, tools are provided for gene set enrichment and pathway analysis.

Home http://bioconductor.org/packages/3.6/bioc/html/oppar.html
Versions 1.4.0, 1.6.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-oppar

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-oppar

and update with:

conda update bioconductor-oppar

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-oppar.