recipe bioconductor-packfinder

de novo Annotation of Pack-TYPE Transposable Elements

Homepage

https://bioconductor.org/packages/3.11/bioc/html/packFinder.html

License

GPL-2

Recipe

/bioconductor-packfinder/meta.yaml

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

package bioconductor-packfinder

(downloads) docker_bioconductor-packfinder

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-packfinder

and update with:

conda update bioconductor-packfinder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-packfinder:<tag>

(see bioconductor-packfinder/tags for valid values for <tag>)