recipe bioconductor-padog

Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/PADOG.html

License:

GPL (>= 2)

Recipe:

/bioconductor-padog/meta.yaml

Links:

biotools: padog, doi: 10.1186/1471-2105-13-136

This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.

package bioconductor-padog

(downloads) docker_bioconductor-padog

Versions:
1.40.0-01.36.0-01.34.0-01.32.0-11.32.0-01.30.0-01.28.0-11.26.0-11.24.0-0

1.40.0-01.36.0-01.34.0-01.32.0-11.32.0-01.30.0-01.28.0-11.26.0-11.24.0-01.22.0-01.20.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-padog

and update with:

conda update bioconductor-padog

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-padog:<tag>

(see bioconductor-padog/tags for valid values for <tag>)

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