-
recipe
bioconductor-padog
¶ Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
- Homepage
- License
GPL (>= 2)
- Recipe
- Links
biotools: padog, doi: 10.1186/1471-2105-13-136
This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.
-
package
bioconductor-padog
¶ -
- Versions
1.28.0-1, 1.26.0-1, 1.24.0-0, 1.22.0-0, 1.20.0-0
- Depends
bioconductor-annotationdbi >=1.48.0,<1.49.0
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-hgu133a.db >=3.2.0,<3.3.0
bioconductor-hgu133plus2.db >=3.2.0,<3.3.0
bioconductor-kegg.db >=3.2.0,<3.3.0
bioconductor-keggdzpathwaysgeo >=1.24.0,<1.25.0
bioconductor-limma >=3.42.0,<3.43.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-padog
and update with:
conda update bioconductor-padog
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-padog:<tag>
(see bioconductor-padog/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-padog/README.html)