-
recipe
bioconductor-padog¶ This package implements a general purpose gene set analysis method called PADOG that downplays the importance of genes that apear often accross the sets of genes to be analyzed. The package provides also a benchmark for gene set analysis methods in terms of sensitivity and ranking using 24 public datasets from KEGGdzPathwaysGEO package.
- Homepage
- License
GPL (>= 2)
- Recipe
- Links
biotools: padog, doi: 10.1186/1471-2105-13-136
-
package
bioconductor-padog¶ 
- Versions
1.24.0-0, 1.22.0-0, 1.20.0-0
- Depends bioconductor-annotationdbi
>=1.44.0,<1.45.0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-hgu133a.db
>=3.2.0,<3.3.0
- Depends bioconductor-hgu133plus2.db
>=3.2.0,<3.3.0
- Depends bioconductor-kegg.db
>=3.2.0,<3.3.0
- Depends bioconductor-keggdzpathwaysgeo
>=1.20.0,<1.21.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-dorng
- Depends r-foreach
- Depends r-gsa
- Depends r-nlme
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-padog
and update with:
conda update bioconductor-padog
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-padog:<tag>
(see bioconductor-padog/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-padog/README.html)