recipe bioconductor-pasillabamsubset

Subset of BAM files from "Pasilla" experiment

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/pasillaBamSubset.html

License:

LGPL

Recipe:

/bioconductor-pasillabamsubset/meta.yaml

Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.

package bioconductor-pasillabamsubset

(downloads) docker_bioconductor-pasillabamsubset

Versions:
0.35.0-0,  0.32.0-1,  0.32.0-0,  0.30.0-0,  0.28.0-1,  0.28.0-0,  0.27.0-0,  0.26.0-0,  0.24.0-0, 

0.35.0-0,  0.32.0-1,  0.32.0-0,  0.30.0-0,  0.28.0-1,  0.28.0-0,  0.27.0-0,  0.26.0-0,  0.24.0-0,  0.22.0-1,  0.22.0-0,  0.20.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pasillabamsubset

and update with:

conda update bioconductor-pasillabamsubset

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pasillabamsubset:<tag>

(see bioconductor-pasillabamsubset/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pasillabamsubset/README.html)