bioconductor-path2ppi

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Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

Home http://bioconductor.org/packages/3.6/bioc/html/Path2PPI.html
Versions 1.6.0, 1.8.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-path2ppi

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-path2ppi

and update with:

conda update bioconductor-path2ppi

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-path2ppi.