recipe bioconductor-pchicdata

Promoter Capture Hi-C data

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/PCHiCdata.html

License:

Artistic-2.0

Recipe:

/bioconductor-pchicdata/meta.yaml

Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.

package bioconductor-pchicdata

(downloads) docker_bioconductor-pchicdata

versions:
1.30.0-0,  1.28.0-0,  1.25.0-0,  1.22.1-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0, 

1.30.0-0,  1.28.0-0,  1.25.0-0,  1.22.1-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0

depends bioconductor-chicago:

>=1.30.0,<1.31.0

depends bioconductor-data-packages:

>=20231203

depends curl:

depends r-base:

>=4.3,<4.4.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-pchicdata

and update with::

   mamba update bioconductor-pchicdata

To create a new environment, run:

mamba create --name myenvname bioconductor-pchicdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-pchicdata:<tag>

(see `bioconductor-pchicdata/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pchicdata/README.html)