recipe bioconductor-pcxn

Exploring, analyzing and visualizing functions utilizing the pcxnData package

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/pcxn.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-pcxn/meta.yaml

Discover the correlated pathways/gene sets of a single pathway/gene set or discover correlation relationships among multiple pathways/gene sets. Draw a heatmap or create a network of your query and extract members of each pathway/gene set found in the available collections (MSigDB H hallmark, MSigDB C2 Canonical pathways, MSigDB C5 GO BP and Pathprint).

package bioconductor-pcxn

(downloads) docker_bioconductor-pcxn

Versions:
2.20.0-0,  2.16.0-0,  2.14.0-0,  2.12.0-2,  2.12.0-0,  2.10.0-0,  2.8.0-1,  2.6.0-1,  2.6.0-0, 

2.20.0-0,  2.16.0-0,  2.14.0-0,  2.12.0-2,  2.12.0-0,  2.10.0-0,  2.8.0-1,  2.6.0-1,  2.6.0-0,  2.4.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pcxn

and update with:

conda update bioconductor-pcxn

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pcxn:<tag>

(see bioconductor-pcxn/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pcxn/README.html)