recipe bioconductor-pdinfobuilder

Platform Design Information Package Builder

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/pdInfoBuilder.html

License:

Artistic-2.0

Recipe:

/bioconductor-pdinfobuilder/meta.yaml

Links:

biotools: pdinfobuilder, doi: 10.1093/bioinformatics/btq431

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

package bioconductor-pdinfobuilder

versions:

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-1, 

1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.46.0-0,  1.44.0-0,  1.42.0-0

depends bioconductor-affxparser:

>=1.74.0,<1.75.0

depends bioconductor-affxparser:

>=1.74.0,<1.75.0a0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-biobase:

>=2.62.0,<2.63.0a0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-biocgenerics:

>=0.48.1,<0.49.0a0

depends bioconductor-biostrings:

>=2.70.0,<2.71.0

depends bioconductor-biostrings:

>=2.70.1,<2.71.0a0

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends bioconductor-iranges:

>=2.36.0,<2.37.0a0

depends bioconductor-oligo:

>=1.66.0,<1.67.0

depends bioconductor-oligo:

>=1.66.0,<1.67.0a0

depends bioconductor-oligoclasses:

>=1.64.0,<1.65.0

depends bioconductor-oligoclasses:

>=1.64.0,<1.65.0a0

depends bioconductor-s4vectors:

>=0.40.0,<0.41.0

depends bioconductor-s4vectors:

>=0.40.2,<0.41.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends liblapack:

>=3.9.0,<4.0a0

depends r-base:

>=4.3,<4.4.0a0

depends r-dbi:

>=0.3.1

depends r-rsqlite:

>=1.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-pdinfobuilder

and update with::

   mamba update bioconductor-pdinfobuilder

To create a new environment, run:

mamba create --name myenvname bioconductor-pdinfobuilder

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-pdinfobuilder:<tag>

(see `bioconductor-pdinfobuilder/tags`_ for valid values for ``<tag>``)

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