recipe bioconductor-pdinfobuilder

Platform Design Information Package Builder

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/pdInfoBuilder.html

License:

Artistic-2.0

Recipe:

/bioconductor-pdinfobuilder/meta.yaml

Links:

biotools: pdinfobuilder, doi: 10.1093/bioinformatics/btq431

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

package bioconductor-pdinfobuilder

Versions:

1.62.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0, 

1.62.0-0,  1.58.0-2,  1.58.0-1,  1.58.0-0,  1.56.0-0,  1.54.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.46.0-0,  1.44.0-0,  1.42.0-0

Depends:

• bioconductor-affxparser >=1.70.0,<1.71.0

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-oligo >=1.62.0,<1.63.0

• bioconductor-oligoclasses >=1.60.0,<1.61.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• r-base >=4.2,<4.3.0a0

• r-dbi >=0.3.1

• r-rsqlite >=1.0.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-pdinfobuilder

and update with:

conda update bioconductor-pdinfobuilder

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pdinfobuilder:<tag>

(see bioconductor-pdinfobuilder/tags for valid values for <tag>)

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