bioconductor-pepxmltab

downloads

Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.

Home http://bioconductor.org/packages/3.6/bioc/html/pepXMLTab.html
Versions 1.10.0, 1.12.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-pepxmltab

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pepxmltab

and update with:

conda update bioconductor-pepxmltab

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-pepxmltab.