recipe bioconductor-phipdata

Container for PhIP-Seq Experiments

Homepage

https://bioconductor.org/packages/3.14/bioc/html/PhIPData.html

License

MIT + file LICENSE

Recipe

/bioconductor-phipdata/meta.yaml

PhIPData defines an S4 class for phage-immunoprecipitation sequencing (PhIP-seq) experiments. Buliding upon the RangedSummarizedExperiment class, PhIPData enables users to coordinate metadata with experimental data in analyses. Additionally, PhIPData provides specialized methods to subset and identify beads-only samples, subset objects using virus aliases, and use existing peptide libraries to populate object parameters.

package bioconductor-phipdata

Versions

1.2.0-0,  1.0.0-0

Depends

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-genomicranges >=1.46.0,<1.47.0

• bioconductor-iranges >=2.28.0,<2.29.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-cli

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-phipdata

and update with:

conda update bioconductor-phipdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phipdata:<tag>

(see bioconductor-phipdata/tags for valid values for <tag>)

Download stats

Link to this page

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