recipe bioconductor-phyloseq

Handling and analysis of high-throughput microbiome census data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/phyloseq.html

License:

AGPL-3

Recipe:

/bioconductor-phyloseq/meta.yaml

Links:

biotools: phyloseq

phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

package bioconductor-phyloseq

Versions:

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.1-0, 

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.1-0,  1.26.0-0,  1.24.2-0,  1.22.3-0,  1.20.0-1,  1.20.0-0,  1.19.1-0,  1.16.2-1,  1.14.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-biomformat >=1.26.0,<1.27.0

• bioconductor-biostrings >=2.66.0,<2.67.0

• bioconductor-multtest >=2.54.0,<2.55.0

• r-ade4 >=1.7-4

• r-ape >=5.0

• r-base >=4.2,<4.3.0a0

• r-cluster >=2.0.4

• r-data.table >=1.10.4

• r-foreach >=1.4.3

• r-ggplot2 >=2.1.0

• r-igraph >=1.0.1

• r-plyr >=1.8.3

• r-reshape2 >=1.4.1

• r-scales >=0.4.0

• r-vegan >=2.5

Required By:

• bioconductor-benchdamic

• bioconductor-rcm

• amptk

• bioconductor-microbiomemarker

• dadaist2

• bioconductor-hmp2data

• r-ampvis

• r-corncob

• r-sigtree

• bioconductor-combi

• bioconductor-metavizr

• lotus2

• r-netcomi

• bioconductor-rpa

• bioconductor-microbiome

• bioconductor-spsimseq

• r-mixkernel

• bioconductor-microbiomedasim

• bioconductor-reconsi

• bioconductor-mbecs

• r-htssip

• bioconductor-siamcat

• bioconductor-simbu

• r-qiime2r

• r-breakaway

• bioconductor-pathostat

• bioconductor-perfect

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-phyloseq

and update with:

conda update bioconductor-phyloseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-phyloseq:<tag>

(see bioconductor-phyloseq/tags for valid values for <tag>)

Download stats

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