- recipe bioconductor-phyloseq
Handling and analysis of high-throughput microbiome census data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/phyloseq.html
- License:
AGPL-3
- Recipe:
- Links:
biotools: phyloseq
phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.
- package bioconductor-phyloseq¶
-
- Versions:
1.42.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.1-0
,1.42.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.1-0
,1.26.0-0
,1.24.2-0
,1.22.3-0
,1.20.0-1
,1.20.0-0
,1.19.1-0
,1.16.2-1
,1.14.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biomformat
>=1.26.0,<1.27.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-multtest
>=2.54.0,<2.55.0
r-ade4
>=1.7-4
r-ape
>=5.0
r-base
>=4.2,<4.3.0a0
r-cluster
>=2.0.4
r-data.table
>=1.10.4
r-foreach
>=1.4.3
r-ggplot2
>=2.1.0
r-igraph
>=1.0.1
r-plyr
>=1.8.3
r-reshape2
>=1.4.1
r-scales
>=0.4.0
r-vegan
>=2.5
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-phyloseq
and update with:
conda update bioconductor-phyloseq
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-phyloseq:<tag>
(see bioconductor-phyloseq/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-phyloseq/README.html)