recipe bioconductor-plogo2

Plot Gene Ontology and KEGG pathway Annotation and Abundance

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/PloGO2.html

License:

GPL-2

Recipe:

/bioconductor-plogo2/meta.yaml

Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.

package bioconductor-plogo2

versions:

1.14.0-0,  1.12.0-0,  1.10.0-0,  1.6.0-0,  1.4.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

depends bioconductor-go.db:

>=3.18.0,<3.19.0

depends bioconductor-gostats:

>=2.68.0,<2.69.0

depends r-base:

>=4.3,<4.4.0a0

depends r-httr:

depends r-lattice:

depends r-openxlsx:

depends r-xtable:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-plogo2

and update with::

   mamba update bioconductor-plogo2

To create a new environment, run:

mamba create --name myenvname bioconductor-plogo2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-plogo2:<tag>

(see `bioconductor-plogo2/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-plogo2/README.html)