recipe bioconductor-polyester

This package can be used to simulate RNA-seq reads from differential expression experiments with replicates. The reads can then be aligned and used to perform comparisons of methods for differential expression.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/polyester.html

License

Artistic-2.0

Recipe

/bioconductor-polyester/meta.yaml

package bioconductor-polyester

(downloads) docker_bioconductor-polyester

Versions

1.18.0-0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-logspline

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-polyester

and update with:

conda update bioconductor-polyester

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-polyester:<tag>

(see bioconductor-polyester/tags for valid values for <tag>)