recipe bioconductor-probamr

Generating SAM file for PSMs in shotgun proteomics data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/proBAMr.html

License

Artistic-2.0

Recipe

/bioconductor-probamr/meta.yaml

Links

biotools: probamr, doi: 10.1074/mcp.M115.052860

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

package bioconductor-probamr

(downloads) docker_bioconductor-probamr

Versions

1.24.0-01.22.0-01.20.0-01.18.0-11.16.0-01.14.0-01.12.0-01.10.0-01.8.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-probamr

and update with:

conda update bioconductor-probamr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-probamr:<tag>

(see bioconductor-probamr/tags for valid values for <tag>)