recipe bioconductor-progeny

Pathway RespOnsive GENes for activity inference from gene expression

Homepage

https://bioconductor.org/packages/3.14/bioc/html/progeny.html

License

Apache License (== 2.0) | file LICENSE

Recipe

/bioconductor-progeny/meta.yaml

This package provides a function to infer pathway activity from gene expression using PROGENy. It contains the linear model we inferred in the publication "Perturbation-response genes reveal signaling footprints in cancer gene expression".

package bioconductor-progeny

Versions

1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.1-0,  1.4.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• r-base >=4.1,<4.2.0a0

• r-dplyr

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-tidyr

Required By

• bioconductor-easier

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-progeny

and update with:

conda update bioconductor-progeny

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-progeny:<tag>

(see bioconductor-progeny/tags for valid values for <tag>)

Download stats

Link to this page

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