recipe bioconductor-progeny

Pathway RespOnsive GENes for activity inference from gene expression

Homepage

https://bioconductor.org/packages/3.12/bioc/html/progeny.html

License

Apache License (== 2.0) | file LICENSE

Recipe

/bioconductor-progeny/meta.yaml

This package provides a function to infer pathway activity from gene expression using PROGENy. It contains the linear model we inferred in the publication "Perturbation-response genes reveal signaling footprints in cancer gene expression".

package bioconductor-progeny

Versions

1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.1-0,  1.4.0-0

Depends

• bioconductor-biobase >=2.50.0,<2.51.0

• r-base >=4.0,<4.1.0a0

• r-dplyr

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-tidyr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-progeny

and update with:

conda update bioconductor-progeny

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-progeny:<tag>

(see bioconductor-progeny/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-progeny/README.html)