recipe bioconductor-progeny

Pathway RespOnsive GENes for activity inference from gene expression

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/progeny.html

License:

Apache License (== 2.0) | file LICENSE

Recipe:

/bioconductor-progeny/meta.yaml

PROGENy is resource that leverages a large compendium of publicly available signaling perturbation experiments to yield a common core of pathway responsive genes for human and mouse. These, coupled with any statistical method, can be used to infer pathway activities from bulk or single-cell transcriptomics.

package bioconductor-progeny

Versions:

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.1-0, 

1.20.0-0,  1.16.0-0,  1.14.0-0,  1.12.0-1,  1.12.0-0,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.4.1-0,  1.4.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-decoupler >=2.4.0,<2.5.0

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-reshape2

• r-tidyr

Required By:

• bioconductor-easier

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-progeny

and update with:

conda update bioconductor-progeny

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-progeny:<tag>

(see bioconductor-progeny/tags for valid values for <tag>)

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