- recipe bioconductor-progeny
Pathway RespOnsive GENes for activity inference from gene expression
- Homepage
https://bioconductor.org/packages/3.14/bioc/html/progeny.html
- License
Apache License (== 2.0) | file LICENSE
- Recipe
This package provides a function to infer pathway activity from gene expression using PROGENy. It contains the linear model we inferred in the publication "Perturbation-response genes reveal signaling footprints in cancer gene expression".
- package bioconductor-progeny¶
-
- Versions
1.16.0-0
,1.14.0-0
,1.12.0-1
,1.12.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.4.1-0
,1.4.0-0
- Depends
bioconductor-biobase
>=2.54.0,<2.55.0
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-progeny
and update with:
conda update bioconductor-progeny
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-progeny:<tag>
(see bioconductor-progeny/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-progeny/README.html)