recipe bioconductor-prolocgui

Interactive visualisation of spatial proteomics data

Homepage

https://bioconductor.org/packages/3.13/bioc/html/pRolocGUI.html

License

GPL-2

Recipe

/bioconductor-prolocgui/meta.yaml

Links

biotools: prolocgui, doi: 10.1038/ncomms9992

The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny.

package bioconductor-prolocgui

Versions

2.2.0-0,  2.0.0-1,  2.0.0-0,  1.22.0-0,  1.20.0-0,  1.18.0-1,  1.16.0-0,  1.12.0-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biocgenerics >=0.38.0,<0.39.0

• bioconductor-msnbase >=2.18.0,<2.19.0

• bioconductor-proloc >=1.32.0,<1.33.0

• r-base >=4.1,<4.2.0a0

• r-colorspace

• r-colourpicker

• r-dplyr

• r-dt >=0.1.40

• r-ggplot2

• r-scales

• r-shiny >=0.9.1

• r-shinydashboard

• r-shinydashboardplus

• r-shinyhelper

• r-shinyjs

• r-shinywidgets

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-prolocgui

and update with:

conda update bioconductor-prolocgui

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-prolocgui:<tag>

(see bioconductor-prolocgui/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-prolocgui/README.html)