recipe bioconductor-qckitfastq

FASTQ Quality Control

Homepage

https://bioconductor.org/packages/3.12/bioc/html/qckitfastq.html

License

Artistic-2.0

Recipe

/bioconductor-qckitfastq/meta.yaml

Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.

package bioconductor-qckitfastq

Versions

1.6.0-1,  1.6.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1,  1.0.0-0

Depends

• bioconductor-rseqan >=1.10.0,<1.11.0

• bioconductor-seqtools >=1.24.0,<1.25.0

• bioconductor-zlibbioc >=1.36.0,<1.37.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=7.5.0

• liblapack >=3.8.0,<4.0a0

• libstdcxx-ng >=7.5.0

• r-base >=4.0,<4.1.0a0

• r-data.table

• r-dplyr

• r-ggplot2

• r-magrittr

• r-rcpp

• r-reshape2

• r-rlang

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qckitfastq

and update with:

conda update bioconductor-qckitfastq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qckitfastq:<tag>

(see bioconductor-qckitfastq/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-qckitfastq/README.html)