recipe bioconductor-qvalue

Q-value estimation for false discovery rate control

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/qvalue.html

License:

LGPL

Recipe:

/bioconductor-qvalue/meta.yaml

This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values and local FDR values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. The local FDR measures the posterior probability the null hypothesis is true given the test's p-value. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining.

package bioconductor-qvalue

Versions:

2.30.0-0,  2.26.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.18.0-0,  2.16.0-1, 

2.30.0-0,  2.26.0-0,  2.24.0-0,  2.22.0-1,  2.22.0-0,  2.20.0-0,  2.18.0-1,  2.18.0-0,  2.16.0-1,  2.16.0-0,  2.14.1-0,  2.14.0-0,  2.12.0-0,  2.10.0-0,  2.8.0-0,  2.6.0-0,  2.4.2-0,  2.2.2-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-reshape2

Required By:

• bioconductor-netresponse

• bioconductor-findit2

• bioconductor-drugvsdisease

• bioconductor-degseq

• bioconductor-anota

• bioconductor-dose

• polystest

• trinity

• bioconductor-champ

• bioconductor-methylkit

• bioconductor-fishpond

• bioconductor-mwastools

• bioconductor-trigger

• vsclust

• r-isva

• r-jackstraw

• rsat-core

• bioconductor-rnasense

• bioconductor-subseq

• r-nbpseq

• bioconductor-sdams

• bioconductor-clusterprofiler

• bioconductor-normr

• bioconductor-opweight

• bioconductor-anota2seq

• bioconductor-metaseqr2

• bioconductor-sights

• bioconductor-derfinder

• bioconductor-eventpointer

• bioconductor-ctsv

• bioconductor-anaquin

• r-virfinder

• bioconductor-ihwpaper

• bioconductor-edge

• bioconductor-webbioc

• bioconductor-epihet

• bioconductor-ribodipa

• bioconductor-rolde

• bioconductor-vsclust

• bioconductor-synapter

• kobas

• bioconductor-chimphumanbraindata

• bioconductor-r3cseq

• bioconductor-msmstests

• bioconductor-erccdashboard

• bioconductor-moma

• bioconductor-signaturesearch

• r-cp4p

• bioconductor-intad

• bioconductor-past

• anvio

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-qvalue

and update with:

conda update bioconductor-qvalue

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-qvalue:<tag>

(see bioconductor-qvalue/tags for valid values for <tag>)

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