- recipe bioconductor-r453plus1toolbox
A package for importing and analyzing data from Roche's Genome Sequencer System
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/R453Plus1Toolbox.html
- License:
LGPL-3
- Recipe:
The R453Plus1 Toolbox comprises useful functions for the analysis of data generated by Roche's 454 sequencing platform. It adds functions for quality assurance as well as for annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. Further, a pipeline for the detection of structural variants is provided.
- package bioconductor-r453plus1toolbox¶
-
- Versions:
1.48.0-0
,1.44.0-2
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-1
,1.40.0-0
,1.38.0-0
,1.36.0-0
,1.48.0-0
,1.44.0-2
,1.44.0-1
,1.44.0-0
,1.42.0-0
,1.40.0-1
,1.40.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-1
,1.32.0-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biomart
>=2.54.0,<2.55.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-shortread
>=1.56.0,<1.57.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
bioconductor-variantannotation
>=1.44.0,<1.45.0
bioconductor-xvector
>=0.38.0,<0.39.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-r453plus1toolbox
and update with:
conda update bioconductor-r453plus1toolbox
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-r453plus1toolbox:<tag>
(see bioconductor-r453plus1toolbox/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-r453plus1toolbox/README.html)