- recipe bioconductor-raggedexperiment
Representation of Sparse Experiments and Assays Across Samples
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/RaggedExperiment.html
- License:
Artistic-2.0
- Recipe:
This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns. The RaggedExperiment class derives from a GRangesList representation and provides a semblance of a rectangular dataset.
- package bioconductor-raggedexperiment¶
-
- Versions:
1.22.0-0
,1.18.0-0
,1.16.0-0
,1.14.1-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.0-0
,1.22.0-0
,1.18.0-0
,1.16.0-0
,1.14.1-0
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-matrixgenerics
>=1.10.0,<1.11.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-raggedexperiment
and update with:
conda update bioconductor-raggedexperiment
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-raggedexperiment:<tag>
(see bioconductor-raggedexperiment/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-raggedexperiment/README.html)