recipe bioconductor-rbec

Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities

Homepage

https://bioconductor.org/packages/3.13/bioc/html/Rbec.html

License

LGPL-3

Recipe

/bioconductor-rbec/meta.yaml

Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.

package bioconductor-rbec

(downloads) docker_bioconductor-rbec

Versions

1.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rbec

and update with:

conda update bioconductor-rbec

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rbec:<tag>

(see bioconductor-rbec/tags for valid values for <tag>)