bioconductor-rbowtie

downloads

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Home http://bioconductor.org/packages/3.6/bioc/html/Rbowtie.html
Versions 1.16.0, 1.18.0
License Artistic-1.0 | file LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rbowtie

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rbowtie

and update with:

conda update bioconductor-rbowtie

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-rbowtie.