recipe bioconductor-rbowtie

R bowtie wrapper

Homepage

https://bioconductor.org/packages/3.11/bioc/html/Rbowtie.html

License

Artistic-2.0 | file LICENSE

Recipe

/bioconductor-rbowtie/meta.yaml

Links

biotools: rbowtie, doi: 10.1038/nmeth.3252

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

package bioconductor-rbowtie

(downloads) docker_bioconductor-rbowtie

Versions

1.28.0-01.26.0-01.24.0-11.24.0-01.22.0-01.20.0-01.18.0-01.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rbowtie

and update with:

conda update bioconductor-rbowtie

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rbowtie:<tag>

(see bioconductor-rbowtie/tags for valid values for <tag>)