recipe bioconductor-rcx

R package implementing the Cytoscape Exchange (CX) format

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/RCX.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-rcx/meta.yaml

Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.

package bioconductor-rcx

Versions:

1.2.0-0

Depends:

• r-base >=4.2,<4.3.0a0

• r-igraph

• r-jsonlite

• r-plyr

Required By:

• bioconductor-ndexr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rcx

and update with:

conda update bioconductor-rcx

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcx:<tag>

(see bioconductor-rcx/tags for valid values for <tag>)

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Link to this page

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