recipe bioconductor-reactomegsa.data

Companion data package for the ReactomeGSA package

Homepage

https://bioconductor.org/packages/3.14/data/experiment/html/ReactomeGSA.data.html

License

Artistic-2.0

Recipe

/bioconductor-reactomegsa.data/meta.yaml

Companion data sets to showcase the functionality of the ReactomeGSA package. This package contains proteomics and RNA-seq data of the melanoma B-cell induction study by Griss et al. and scRNA-seq data from Jerby-Arnon et al.

package bioconductor-reactomegsa.data

Versions

1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends

• bioconductor-edger >=3.36.0,<3.37.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-reactomegsa >=1.8.0,<1.9.0

• curl >=7.79.1,<8.0a0

• r-base >=4.1,<4.2.0a0

• r-seurat

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-reactomegsa.data

and update with:

conda update bioconductor-reactomegsa.data

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-reactomegsa.data:<tag>

(see bioconductor-reactomegsa.data/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-reactomegsa.data/README.html)