recipe bioconductor-reactomepa

Reactome Pathway Analysis

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/ReactomePA.html

License:

GPL-2

Recipe:

/bioconductor-reactomepa/meta.yaml

Links:

biotools: reactomepa

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

package bioconductor-reactomepa

Versions:

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0, 

1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-dose >=3.24.0,<3.25.0

• bioconductor-enrichplot >=1.18.0,<1.19.0

• bioconductor-graphite >=1.44.0,<1.45.0

• bioconductor-reactome.db >=1.82.0,<1.83.0

• r-base >=4.2,<4.3.0a0

• r-ggplot2 >=3.3.5

• r-ggraph

• r-gson

• r-igraph

Required By:

• bioconductor-pigengene

• bioconductor-sctensor

• bioconductor-epihet

• bioconductor-mirsponger

• bioconductor-biocancer

• bioconductor-multisight

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-reactomepa

and update with:

conda update bioconductor-reactomepa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-reactomepa:<tag>

(see bioconductor-reactomepa/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-reactomepa/README.html)