- recipe bioconductor-reactomepa
Reactome Pathway Analysis
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ReactomePA.html
- License:
GPL-2
- Recipe:
- Links:
biotools: reactomepa
This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.
- package bioconductor-reactomepa¶
-
- Versions:
1.42.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-0
,1.42.0-0
,1.38.0-0
,1.36.0-0
,1.34.0-1
,1.34.0-0
,1.32.0-0
,1.30.0-0
,1.28.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
- Depends:
bioconductor-annotationdbi
>=1.60.0,<1.61.0
bioconductor-dose
>=3.24.0,<3.25.0
bioconductor-enrichplot
>=1.18.0,<1.19.0
bioconductor-graphite
>=1.44.0,<1.45.0
bioconductor-reactome.db
>=1.82.0,<1.83.0
r-base
>=4.2,<4.3.0a0
r-ggplot2
>=3.3.5
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-reactomepa
and update with:
conda update bioconductor-reactomepa
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-reactomepa:<tag>
(see bioconductor-reactomepa/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-reactomepa/README.html)