recipe bioconductor-regionreport

Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results

Homepage

https://bioconductor.org/packages/3.13/bioc/html/regionReport.html

License

Artistic-2.0

Recipe

/bioconductor-regionreport/meta.yaml

Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.

package bioconductor-regionreport

Versions

1.26.0-0,  1.24.2-0,  1.24.0-0,  1.22.0-0,  1.20.0-0,  1.18.2-0,  1.16.1-0

Depends

• bioconductor-biocstyle >=2.20.0,<2.21.0

• bioconductor-deformats >=1.20.0,<1.21.0

• bioconductor-derfinder >=1.26.0,<1.27.0

• bioconductor-deseq2 >=1.32.0,<1.33.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-genomicranges >=1.44.0,<1.45.0

• bioconductor-s4vectors >=0.30.0,<0.31.0

• bioconductor-summarizedexperiment >=1.22.0,<1.23.0

• r-base >=4.1,<4.2.0a0

• r-knitr >=1.6

• r-knitrbootstrap >=0.9.0

• r-refmanager

• r-rmarkdown >=0.9.5

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-regionreport

and update with:

conda update bioconductor-regionreport

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-regionreport:<tag>

(see bioconductor-regionreport/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-regionreport/README.html)