recipe bioconductor-regionreport

Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results

Homepage

https://bioconductor.org/packages/3.10/bioc/html/regionReport.html

License

Artistic-2.0

Recipe

/bioconductor-regionreport/meta.yaml

Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.

package bioconductor-regionreport

Versions

1.20.0-0, 1.18.2-0, 1.16.1-0

Depends

• bioconductor-biocstyle >=2.14.0,<2.15.0

• bioconductor-deformats >=1.14.0,<1.15.0

• bioconductor-derfinder >=1.20.0,<1.21.0

• bioconductor-deseq2 >=1.26.0,<1.27.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• r-base >=3.6,<3.7.0a0

• r-knitcitations >=1.0.1

• r-knitr >=1.6

• r-knitrbootstrap >=0.9.0

• r-refmanager

• r-rmarkdown >=0.9.5

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-regionreport

and update with:

conda update bioconductor-regionreport

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-regionreport:<tag>

(see bioconductor-regionreport/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-regionreport/README.html)