-
recipe
bioconductor-regsplice
¶ L1-regularization based methods for detection of differential splicing
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/regsplice.html
- License
MIT + file LICENSE
- Recipe
- Links
biotools: regsplice, doi: 10.1038/nmeth.3252
Statistical methods for detection of differential splicing (differential exon usage) in RNA-seq and exon microarray data, using L1-regularization (lasso) to improve power.
-
package
bioconductor-regsplice
¶ -
- Versions
1.12.0-0, 1.10.0-1, 1.8.0-0, 1.6.0-0, 1.4.0-0
- Depends
bioconductor-edger >=3.28.0,<3.29.0
bioconductor-limma >=3.42.0,<3.43.0
bioconductor-s4vectors >=0.24.0,<0.25.0
bioconductor-summarizedexperiment >=1.16.0,<1.17.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-regsplice
and update with:
conda update bioconductor-regsplice
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-regsplice:<tag>
(see bioconductor-regsplice/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-regsplice/README.html)