recipe bioconductor-regsplice

L1-regularization based methods for detection of differential splicing

Homepage

https://bioconductor.org/packages/3.10/bioc/html/regsplice.html

License

MIT + file LICENSE

Recipe

/bioconductor-regsplice/meta.yaml

Links

biotools: regsplice, doi: 10.1038/nmeth.3252

Statistical methods for detection of differential splicing (differential exon usage) in RNA-seq and exon microarray data, using L1-regularization (lasso) to improve power.

package bioconductor-regsplice

Versions

1.12.0-0, 1.10.0-1, 1.8.0-0, 1.6.0-0, 1.4.0-0

Depends

• bioconductor-edger >=3.28.0,<3.29.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• bioconductor-summarizedexperiment >=1.16.0,<1.17.0

• r-base >=3.6,<3.7.0a0

• r-glmnet

• r-pbapply

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-regsplice

and update with:

conda update bioconductor-regsplice

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-regsplice:<tag>

(see bioconductor-regsplice/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-regsplice/README.html)