- recipe bioconductor-repitools
Epigenomic tools
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/Repitools.html
- License:
LGPL (>= 2)
- Recipe:
- Links:
biotools: repitools
Tools for the analysis of enrichment-based epigenomic data. Features include summarization and visualization of epigenomic data across promoters according to gene expression context, finding regions of differential methylation/binding, BayMeth for quantifying methylation etc.
- package bioconductor-repitools¶
-
- Versions:
1.44.0-0
,1.40.0-2
,1.40.0-1
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.36.0-0
,1.34.0-0
,1.32.0-0
,1.44.0-0
,1.40.0-2
,1.40.0-1
,1.40.0-0
,1.38.0-0
,1.36.0-1
,1.36.0-0
,1.34.0-0
,1.32.0-0
,1.30.0-1
,1.28.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-0
- Depends:
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-dnacopy
>=1.72.0,<1.73.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-ringo
>=1.62.0,<1.63.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
libblas
>=3.9.0,<4.0a0
libgcc-ng
>=12
liblapack
>=3.9.0,<4.0a0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-repitools
and update with:
conda update bioconductor-repitools
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-repitools:<tag>
(see bioconductor-repitools/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-repitools/README.html)