recipe bioconductor-reportingtools

Tools for making reports in various formats

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ReportingTools.html

License:

Artistic-2.0

Recipe:

/bioconductor-reportingtools/meta.yaml

Links:

biotools: reportingtools

The ReportingTools software package enables users to easily display reports of analysis results generated from sources such as microarray and sequencing data. The package allows users to create HTML pages that may be viewed on a web browser such as Safari, or in other formats readable by programs such as Excel. Users can generate tables with sortable and filterable columns, make and display plots, and link table entries to other data sources such as NCBI or larger plots within the HTML page. Using the package, users can also produce a table of contents page to link various reports together for a particular project that can be viewed in a web browser. For more examples, please visit our site: http:// research-pub.gene.com/ReportingTools.

package bioconductor-reportingtools

versions:

2.42.2-0,  2.39.0-0,  2.38.0-0,  2.34.0-0,  2.32.0-0,  2.30.2-0,  2.30.0-0,  2.28.0-0,  2.26.0-0, 

2.42.2-0,  2.39.0-0,  2.38.0-0,  2.34.0-0,  2.32.0-0,  2.30.2-0,  2.30.0-0,  2.28.0-0,  2.26.0-0,  2.24.0-1,  2.22.1-0,  2.22.0-0,  2.20.0-0,  2.17.3-0

depends bioconductor-annotate:

>=1.80.0,<1.81.0

depends bioconductor-annotationdbi:

>=1.64.0,<1.65.0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-biocgenerics:

>=0.48.0,<0.49.0

depends bioconductor-category:

>=2.68.0,<2.69.0

depends bioconductor-deseq2:

>=1.42.0,<1.43.0

depends bioconductor-edger:

>=4.0.0,<4.1.0

depends bioconductor-ggbio:

>=1.50.0,<1.51.0

depends bioconductor-gostats:

>=2.68.0,<2.69.0

depends bioconductor-gseabase:

>=1.64.0,<1.65.0

depends bioconductor-iranges:

>=2.36.0,<2.37.0

depends bioconductor-limma:

>=3.58.0,<3.59.0

depends bioconductor-pfam.db:

>=3.18.0,<3.19.0

depends r-base:

>=4.3,<4.4.0a0

depends r-ggplot2:

depends r-hwriter:

depends r-knitr:

depends r-lattice:

depends r-r.utils:

depends r-xml:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-reportingtools

and update with::

   mamba update bioconductor-reportingtools

To create a new environment, run:

mamba create --name myenvname bioconductor-reportingtools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-reportingtools:<tag>

(see `bioconductor-reportingtools/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-reportingtools/README.html)