recipe bioconductor-reqon

Recalibrating Quality Of Nucleotides

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/ReQON.html

License:

GPL-2

Recipe:

/bioconductor-reqon/meta.yaml

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

package bioconductor-reqon

(downloads) docker_bioconductor-reqon

versions:
1.48.0-0,  1.46.0-0,  1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.32.0-0,  1.30.0-1, 

1.48.0-0,  1.46.0-0,  1.44.0-0,  1.40.0-0,  1.38.0-0,  1.36.0-1,  1.36.0-0,  1.32.0-0,  1.30.0-1,  1.28.0-0

depends bioconductor-rsamtools:

>=2.18.0,<2.19.0

depends bioconductor-seqbias:

>=1.50.0,<1.51.0

depends openjdk:

depends r-base:

>=4.3,<4.4.0a0

depends r-rjava:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-reqon

and update with::

   mamba update bioconductor-reqon

To create a new environment, run:

mamba create --name myenvname bioconductor-reqon

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-reqon:<tag>

(see `bioconductor-reqon/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-reqon/README.html)