recipe bioconductor-rfpred

Based on external numerous data files where rfPred scores are pre-calculated on all genomic positions of the human exome, the package gives rfPred scores to missense variants identified by the chromosome, the position (hg19 version), the referent and alternative nucleotids and the uniprot identifier of the protein. Note that for using the package, the user has to be connected on the Internet or to download the TabixFile and index (approximately 3.3 Go).

Homepage

https://bioconductor.org/packages/3.9/bioc/html/rfPred.html

License

GPL (>=2 )

Recipe

/bioconductor-rfpred/meta.yaml

Links

biotools: rfpred, doi: 10.1101/037127

package bioconductor-rfpred

(downloads) docker_bioconductor-rfpred

Versions

1.22.0-1, 1.20.0-0, 1.18.0-0, 1.16.0-0, 1.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rfpred

and update with:

conda update bioconductor-rfpred

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rfpred:<tag>

(see bioconductor-rfpred/tags for valid values for <tag>)