- recipe bioconductor-rgsepd
Gene Set Enrichment / Projection Displays
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/rgsepd.html
- License:
GPL-3
- Recipe:
- Links:
biotools: rgsepd, doi: 10.1038/nmeth.3252
R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at transcript IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.
- package bioconductor-rgsepd¶
-
- Versions:
1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
,1.12.0-0
,1.26.0-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
,1.20.0-0
,1.18.0-0
,1.16.0-1
,1.14.0-0
,1.12.0-0
,1.10.0-0
,1.8.0-0
- Depends:
bioconductor-annotationdbi
>=1.56.0,<1.57.0
bioconductor-biomart
>=2.50.0,<2.51.0
bioconductor-deseq2
>=1.34.0,<1.35.0
bioconductor-go.db
>=3.14.0,<3.15.0
bioconductor-goseq
>=1.46.0,<1.47.0
bioconductor-org.hs.eg.db
>=3.14.0,<3.15.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rgsepd
and update with:
conda update bioconductor-rgsepd
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rgsepd:<tag>
(see bioconductor-rgsepd/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rgsepd/README.html)