bioconductor-rgsepd

downloads

R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at RefSeq IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.

Home http://bioconductor.org/packages/3.6/bioc/html/rgsepd.html
Versions 1.10.0, 1.8.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rgsepd

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rgsepd

and update with:

conda update bioconductor-rgsepd

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-rgsepd.