bioconductor-rgsepd¶
R/GSEPD is a bioinformatics package for R to help disambiguate transcriptome samples (a matrix of RNA-Seq counts at RefSeq IDs) by automating differential expression (with DESeq2), then gene set enrichment (with GOSeq), and finally a N-dimensional projection to quantify in which ways each sample is like either treatment group.
| Home | http://bioconductor.org/packages/3.7/bioc/html/rgsepd.html |
| Versions | 1.10.0, 1.12.0, 1.8.0 |
| License | GPL-3 |
| Recipe | https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rgsepd |
| Links | biotools: rgsepd, doi: 10.1038/nmeth.3252 |
Installation¶
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-rgsepd
and update with:
conda update bioconductor-rgsepd
A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-rgsepd.
Link to this page¶
Render an 
badge with the following Markdown:
[](http://bioconda.github.io/recipes/bioconductor-rgsepd/README.html)
