recipe bioconductor-rhisat2

R Wrapper for HISAT2 Aligner

Homepage

https://bioconductor.org/packages/3.10/bioc/html/Rhisat2.html

License

GPL-3

Recipe

/bioconductor-rhisat2/meta.yaml

An R interface to the HISAT2 spliced short-read aligner by Kim et al. (2015). The package contains wrapper functions to create a genome index and to perform the read alignment to the generated index.

package bioconductor-rhisat2

(downloads) docker_bioconductor-rhisat2

Versions

1.2.0-0, 1.0.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rhisat2

and update with:

conda update bioconductor-rhisat2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rhisat2:<tag>

(see bioconductor-rhisat2/tags for valid values for <tag>)