recipe bioconductor-riboprofiling

Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3’UTR, and 5’UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/RiboProfiling.html

License

GPL-3

Recipe

/bioconductor-riboprofiling/meta.yaml

Links

biotools: riboprofiling, doi: 10.12688/f1000research.8964.1

package bioconductor-riboprofiling

(downloads) docker_bioconductor-riboprofiling

Versions

1.14.0-1, 1.12.0-1, 1.12.0-0, 1.10.0-0, 1.7.1-0, 1.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-riboprofiling

and update with:

conda update bioconductor-riboprofiling

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-riboprofiling:<tag>

(see bioconductor-riboprofiling/tags for valid values for <tag>)