bioconductor-riboprofiling

downloads

Starting with a BAM file, this package provides the necessary functions for quality assessment, read start position recalibration, the counting of reads on CDS, 3’UTR, and 5’UTR, plotting of count data: pairs, log fold-change, codon frequency and coverage assessment, principal component analysis on codon coverage.

Home http://bioconductor.org/packages/3.6/bioc/html/RiboProfiling.html
Versions 1.6.0, 1.7.1
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-riboprofiling

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-riboprofiling

and update with:

conda update bioconductor-riboprofiling

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-riboprofiling.