-
recipe
bioconductor-ringo¶ The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.
- Homepage
- License
Artistic-2.0
- Recipe
- Links
biotools: ringo
-
package
bioconductor-ringo¶ 
- Versions
1.46.0-0, 1.44.0-0, 1.42.0-0, 1.40.0-0, 1.38.0-1, 1.38.0-0
- Depends bioconductor-biobase
>=2.42.0,<2.43.0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-genefilter
>=1.64.0,<1.65.0
- Depends bioconductor-limma
>=3.38.0,<3.39.0
- Depends bioconductor-vsn
>=3.50.0,<3.51.0
- Depends libgcc-ng
>=7.3.0
- Depends libstdcxx-ng
>=7.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-lattice
- Depends r-matrix
- Depends r-rcolorbrewer
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ringo
and update with:
conda update bioconductor-ringo
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ringo:<tag>
(see bioconductor-ringo/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ringo/README.html)