bioconductor-ringo

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The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.

Home http://bioconductor.org/packages/3.6/bioc/html/Ringo.html
Versions 1.38.0, 1.40.0, 1.42.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ringo

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ringo

and update with:

conda update bioconductor-ringo

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-ringo.