recipe bioconductor-ringo

The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.







biotools: ringo

package bioconductor-ringo

(downloads) docker_bioconductor-ringo


1.46.0-0, 1.44.0-0, 1.42.0-0, 1.40.0-0, 1.38.0-1, 1.38.0-0

Depends bioconductor-biobase


Depends bioconductor-biocgenerics


Depends bioconductor-genefilter


Depends bioconductor-limma


Depends bioconductor-vsn


Depends libgcc-ng


Depends libstdcxx-ng


Depends r-base


Depends r-lattice

Depends r-matrix

Depends r-rcolorbrewer



With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ringo

and update with:

conda update bioconductor-ringo

or use the docker container:

docker pull<tag>

(see bioconductor-ringo/tags for valid values for <tag>)