-
recipe
bioconductor-ringo
R Investigation of ChIP-chip Oligoarrays
- Homepage
- License
Artistic-2.0
- Recipe
- Links
biotools: ringo
The package Ringo facilitates the primary analysis of ChIP-chip data. The main functionalities of the package are data read-in, quality assessment, data visualisation and identification of genomic regions showing enrichment in ChIP-chip. The package has functions to deal with two-color oligonucleotide microarrays from NimbleGen used in ChIP-chip projects, but also contains more general functions for ChIP-chip data analysis, given that the data is supplied as RGList (raw) or ExpressionSet (pre- processed). The package employs functions from various other packages of the Bioconductor project and provides additional ChIP-chip-specific and NimbleGen-specific functionalities.
-
package
bioconductor-ringo
¶ -
- Versions
1.54.0-0
,1.52.0-0
,1.50.0-0
,1.48.0-1
,1.46.0-0
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.54.0-0
,1.52.0-0
,1.50.0-0
,1.48.0-1
,1.46.0-0
,1.44.0-0
,1.42.0-0
,1.40.0-0
,1.38.0-1
,1.38.0-0
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-biocgenerics
>=0.36.0,<0.37.0
bioconductor-genefilter
>=1.72.0,<1.73.0
bioconductor-limma
>=3.46.0,<3.47.0
bioconductor-vsn
>=3.58.0,<3.59.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=7.5.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=7.5.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-ringo
and update with:
conda update bioconductor-ringo
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-ringo:<tag>
(see bioconductor-ringo/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-ringo/README.html)