recipe bioconductor-ritan

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/RITAN.html

License

file LICENSE

Recipe

/bioconductor-ritan/meta.yaml

package bioconductor-ritan

(downloads) docker_bioconductor-ritan

Versions

1.6.0-1, 1.6.0-0

Depends bioconductor-bgeedb

>=2.8.0,<2.9.0

Depends bioconductor-ritandata

>=1.6.0,<1.7.0

Depends bioconductor-stringdb

>=1.22.0,<1.23.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dynamictreecut

Depends r-ggplot2

Depends r-gplots

Depends r-gridextra

Depends r-gsubfn

Depends r-hash

Depends r-igraph

Depends r-knitr

Depends r-linkcomm

Depends r-mcl

Depends r-plotrix

Depends r-png

Depends r-rcolorbrewer

Depends r-reshape2

Depends r-sqldf

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ritan

and update with:

conda update bioconductor-ritan

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ritan:<tag>

(see bioconductor-ritan/tags for valid values for <tag>)