recipe bioconductor-rsamtools

This package provides an interface to the ‘samtools’, ‘bcftools’, and ‘tabix’ utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Rsamtools.html

License

Artistic-2.0 | file LICENSE

Recipe

/bioconductor-rsamtools/meta.yaml

Links

biotools: rsamtools, doi: 10.1038/nmeth.3252

package bioconductor-rsamtools

(downloads) docker_bioconductor-rsamtools

Versions

1.34.0-0, 1.32.3-0, 1.30.0-0, 1.28.0-0, 1.26.1-0, 1.24.0-0, 1.22.0-1, 1.22.0-0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-bitops

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rsamtools

and update with:

conda update bioconductor-rsamtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rsamtools:<tag>

(see bioconductor-rsamtools/tags for valid values for <tag>)