- recipe bioconductor-rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/Rsamtools.html
- License:
Artistic-2.0 | file LICENSE
- Recipe:
- Links:
biotools: rsamtools, doi: 10.1038/nmeth.3252
This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.
- package bioconductor-rsamtools¶
-
- Versions:
2.10.0-1
,2.10.0-0
,2.8.0-0
,2.6.0-1
,2.6.0-0
,2.4.0-0
,2.2.0-0
,2.0.0-1
,1.34.0-0
,2.10.0-1
,2.10.0-0
,2.8.0-0
,2.6.0-1
,2.6.0-0
,2.4.0-0
,2.2.0-0
,2.0.0-1
,1.34.0-0
,1.32.3-0
,1.30.0-0
,1.28.0-0
,1.26.1-0
,1.24.0-0
,1.22.0-1
,1.22.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-biocparallel
>=1.28.0,<1.29.0
bioconductor-biostrings
>=2.62.0,<2.63.0
bioconductor-genomeinfodb
>=1.30.0,<1.31.0
bioconductor-genomicranges
>=1.46.0,<1.47.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-rhtslib
>=1.26.0,<1.27.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-xvector
>=0.34.0,<0.35.0
bioconductor-zlibbioc
>=1.40.0,<1.41.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rsamtools
and update with:
conda update bioconductor-rsamtools
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rsamtools:<tag>
(see bioconductor-rsamtools/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rsamtools/README.html)