Package Recipe 'bioconductor-rsamtools'

recipe bioconductor-rsamtools

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

Homepage: https://bioconductor.org/packages/3.11/bioc/html/Rsamtools.html
License: Artistic-2.0 | file LICENSE
Recipe: /bioconductor-rsamtools/meta.yaml
Links: biotools: rsamtools, doi: 10.1038/nmeth.3252

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

package bioconductor-rsamtools¶

Versions

2.4.0-0, 2.2.0-0, 2.0.0-1, 1.34.0-0, 1.32.3-0, 1.30.0-0, 1.28.0-0, 1.26.1-0, 1.24.0-0,

2.4.0-0, 2.2.0-0, 2.0.0-1, 1.34.0-0, 1.32.3-0, 1.30.0-0, 1.28.0-0, 1.26.1-0, 1.24.0-0, 1.22.0-1, 1.22.0-0

Depends

bioconductor-biocgenerics >=0.34.0,<0.35.0
bioconductor-biocparallel >=1.22.0,<1.23.0
bioconductor-biostrings >=2.56.0,<2.57.0
bioconductor-genomeinfodb >=1.24.0,<1.25.0
bioconductor-genomicranges >=1.40.0,<1.41.0
bioconductor-iranges >=2.22.0,<2.23.0
bioconductor-rhtslib >=1.20.0,<1.21.0
bioconductor-s4vectors >=0.26.0,<0.27.0
bioconductor-xvector >=0.28.0,<0.29.0
bioconductor-zlibbioc >=1.34.0,<1.35.0
libblas >=3.8.0,<4.0a0
libgcc-ng >=7.3.0
liblapack >=3.8.0,<3.9.0a0
libstdcxx-ng >=7.3.0
r-base >=4.0,<4.1.0a0
r-bitops

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rsamtools

and update with:

conda update bioconductor-rsamtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rsamtools:<tag>

(see bioconductor-rsamtools/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rsamtools/README.html)