Package Recipe 'bioconductor-rsamtools'

recipe bioconductor-rsamtools

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

Homepage:: https://bioconductor.org/packages/3.14/bioc/html/Rsamtools.html
License:: Artistic-2.0 | file LICENSE
Recipe:: /bioconductor-rsamtools/meta.yaml
Links:: biotools: rsamtools, doi: 10.1038/nmeth.3252

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

package bioconductor-rsamtools¶

Versions:

2.10.0-1, 2.10.0-0, 2.8.0-0, 2.6.0-1, 2.6.0-0, 2.4.0-0, 2.2.0-0, 2.0.0-1, 1.34.0-0,

2.10.0-1, 2.10.0-0, 2.8.0-0, 2.6.0-1, 2.6.0-0, 2.4.0-0, 2.2.0-0, 2.0.0-1, 1.34.0-0, 1.32.3-0, 1.30.0-0, 1.28.0-0, 1.26.1-0, 1.24.0-0, 1.22.0-1, 1.22.0-0

Depends:

bioconductor-biocgenerics >=0.40.0,<0.41.0
bioconductor-biocparallel >=1.28.0,<1.29.0
bioconductor-biostrings >=2.62.0,<2.63.0
bioconductor-genomeinfodb >=1.30.0,<1.31.0
bioconductor-genomicranges >=1.46.0,<1.47.0
bioconductor-iranges >=2.28.0,<2.29.0
bioconductor-rhtslib >=1.26.0,<1.27.0
bioconductor-s4vectors >=0.32.0,<0.33.0
bioconductor-xvector >=0.34.0,<0.35.0
bioconductor-zlibbioc >=1.40.0,<1.41.0
libblas >=3.8.0,<4.0a0
libgcc-ng >=10.3.0
liblapack >=3.8.0,<4.0a0
libstdcxx-ng >=10.3.0
r-base >=4.1,<4.2.0a0
r-bitops

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rsamtools

and update with:

conda update bioconductor-rsamtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rsamtools:<tag>

(see bioconductor-rsamtools/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rsamtools/README.html)