-
recipe
bioconductor-rsamtools¶ This package provides an interface to the ‘samtools’, ‘bcftools’, and ‘tabix’ utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.
- Homepage
https://bioconductor.org/packages/3.9/bioc/html/Rsamtools.html
- License
Artistic-2.0 | file LICENSE
- Recipe
- Links
biotools: rsamtools, doi: 10.1038/nmeth.3252
-
package
bioconductor-rsamtools¶ 
- Versions
1.34.0-0, 1.32.3-0, 1.30.0-0, 1.28.0-0, 1.26.1-0, 1.24.0-0, 1.22.0-1, 1.22.0-0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-biocparallel
>=1.16.0,<1.17.0
- Depends bioconductor-biostrings
>=2.50.0,<2.51.0
- Depends bioconductor-genomeinfodb
>=1.18.0,<1.19.0
- Depends bioconductor-genomicranges
>=1.34.0,<1.35.0
- Depends bioconductor-iranges
>=2.16.0,<2.17.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-xvector
>=0.22.0,<0.23.0
- Depends bioconductor-zlibbioc
>=1.28.0,<1.29.0
- Depends libgcc-ng
>=7.3.0
- Depends libstdcxx-ng
>=7.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-bitops
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-rsamtools
and update with:
conda update bioconductor-rsamtools
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rsamtools:<tag>
(see bioconductor-rsamtools/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rsamtools/README.html)