- recipe bioconductor-rsubread
Mapping, quantification and variant analysis of sequencing data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/Rsubread.html
- License:
GPL (>=3)
- Recipe:
- Links:
biotools: rsubread
Alignment, quantification and analysis of RNA sequencing data (including both bulk RNA-seq and scRNA-seq) and DNA sequenicng data (including ATAC-seq, ChIP-seq, WGS, WES etc). Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. Can be applied to all major sequencing techologies and to both short and long sequence reads.
- package bioconductor-rsubread¶
-
- Versions:
2.12.0-1
,2.12.0-0
,2.8.2-0
,2.8.1-0
,2.8.0-0
,2.6.1-0
,2.4.3-0
,2.4.0-0
,2.2.1-0
,2.12.0-1
,2.12.0-0
,2.8.2-0
,2.8.1-0
,2.8.0-0
,2.6.1-0
,2.4.3-0
,2.4.0-0
,2.2.1-0
,2.0.0-0
,1.34.6-0
,1.34.4-0
,1.34.0-0
,1.32.4-0
,1.32.2-0
,1.30.9-0
,1.28.1-0
,1.28.0-0
,1.26.1-0
,1.25.2-0
,1.23.0-0
,1.22.1-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-rsubread
and update with:
conda update bioconductor-rsubread
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-rsubread:<tag>
(see bioconductor-rsubread/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-rsubread/README.html)