recipe bioconductor-rsubread

Mapping, quantification and variant analysis of sequencing data

Homepage

https://bioconductor.org/packages/3.12/bioc/html/Rsubread.html

License

GPL (>=3)

Recipe

/bioconductor-rsubread/meta.yaml

Links

biotools: rsubread

Alignment, quantification and analysis of RNA sequencing data (including both bulk RNA-seq and scRNA-seq) and DNA sequenicng data (including ATAC-seq, ChIP-seq, WGS, WES etc). Includes functionality for read mapping, read counting, SNP calling, structural variant detection and gene fusion discovery. Can be applied to all major sequencing techologies and to both short and long sequence reads.

package bioconductor-rsubread

(downloads) docker_bioconductor-rsubread

Versions
2.4.0-02.2.1-02.0.0-01.34.6-01.34.4-01.34.0-01.32.4-01.32.2-01.30.9-0

2.4.0-02.2.1-02.0.0-01.34.6-01.34.4-01.34.0-01.32.4-01.32.2-01.30.9-01.28.1-01.28.0-01.26.1-01.25.2-01.23.0-01.22.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rsubread

and update with:

conda update bioconductor-rsubread

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rsubread:<tag>

(see bioconductor-rsubread/tags for valid values for <tag>)