recipe bioconductor-rsvsim

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/RSVSim.html

License

LGPL-3

Recipe

/bioconductor-rsvsim/meta.yaml

Links

biotools: rsvsim, doi: 10.1093/bioinformatics/btt198

package bioconductor-rsvsim

(downloads) docker_bioconductor-rsvsim

Versions

1.22.0-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rsvsim

and update with:

conda update bioconductor-rsvsim

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rsvsim:<tag>

(see bioconductor-rsvsim/tags for valid values for <tag>)