bioconductor-rsvsim

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RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Home http://bioconductor.org/packages/3.7/bioc/html/RSVSim.html
Versions 1.16.0, 1.18.0, 1.20.0
License LGPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rsvsim
Links biotools: rsvsim, doi: 10.1093/bioinformatics/btt198

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rsvsim

and update with:

conda update bioconductor-rsvsim

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-rsvsim.