recipe bioconductor-rtcga.rnaseq

Rna-seq datasets from The Cancer Genome Atlas Project

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/RTCGA.rnaseq.html

License:

GPL-2

Recipe:

/bioconductor-rtcga.rnaseq/meta.yaml

Package provides rna-seq datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Rna-seq data format is explained here https://wiki.nci.nih.gov/display/TCGA/RNASeq+Version+2. Data source is illumina hiseq Level 3 RSEM normalized expression data. Data from 2015-11-01 snapshot.

package bioconductor-rtcga.rnaseq

(downloads) docker_bioconductor-rtcga.rnaseq

Versions:
20151101.27.0-0,  20151101.24.0-1,  20151101.24.0-0,  20151101.22.0-0,  20151101.20.0-1,  20151101.20.0-0,  20151101.19.0-0,  20151101.18.0-0,  20151101.16.0-0, 

20151101.27.0-0,  20151101.24.0-1,  20151101.24.0-0,  20151101.22.0-0,  20151101.20.0-1,  20151101.20.0-0,  20151101.19.0-0,  20151101.18.0-0,  20151101.16.0-0,  20151101.14.0-1,  20151101.14.0-0,  20151101.12.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-rtcga.rnaseq

and update with:

conda update bioconductor-rtcga.rnaseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtcga.rnaseq:<tag>

(see bioconductor-rtcga.rnaseq/tags for valid values for <tag>)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rtcga.rnaseq/README.html)