bioconductor-rtracklayer

downloads

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Home http://bioconductor.org/packages/3.6/bioc/html/rtracklayer.html
Versions 1.30.0, 1.30.1, 1.32.2, 1.34.1, 1.34.2, 1.36.6, 1.38.0
License Artistic-2.0 + file LICENSE
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rtracklayer

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtracklayer

and update with:

conda update bioconductor-rtracklayer

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-rtracklayer.