recipe bioconductor-rtracklayer

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/rtracklayer.html

License

Artistic-2.0 + file LICENSE

Recipe

/bioconductor-rtracklayer/meta.yaml

Links

biotools: rtracklayer

package bioconductor-rtracklayer

(downloads) docker_bioconductor-rtracklayer

Versions

1.42.1-1, 1.42.1-0, 1.40.6-0, 1.38.3-0, 1.38.0-0, 1.36.6-0, 1.34.2-1, 1.34.1-0, 1.32.2-1, 1.30.1-0, 1.30.0-1

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends bioconductor-zlibbioc

>=1.28.0,<1.29.0

Depends libgcc-ng

>=7.3.0

Depends openssl

>=1.1.1a,<1.1.2a

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-rcurl

>=1.4-2

Depends r-xml

>=1.98-0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtracklayer

and update with:

conda update bioconductor-rtracklayer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtracklayer:<tag>

(see bioconductor-rtracklayer/tags for valid values for <tag>)