recipe bioconductor-rtracklayer

R interface to genome annotation files and the UCSC genome browser

Homepage

https://bioconductor.org/packages/3.12/bioc/html/rtracklayer.html

License

Artistic-2.0 + file LICENSE

Recipe

/bioconductor-rtracklayer/meta.yaml

Links

biotools: rtracklayer

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

package bioconductor-rtracklayer

(downloads) docker_bioconductor-rtracklayer

Versions
1.50.0-11.50.0-01.48.0-01.46.0-01.44.2-11.44.2-01.44.0-11.42.1-11.42.1-0

1.50.0-11.50.0-01.48.0-01.46.0-01.44.2-11.44.2-01.44.0-11.42.1-11.42.1-01.40.6-01.38.3-01.38.0-01.36.6-01.34.2-11.34.1-01.32.2-11.30.1-01.30.0-1

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rtracklayer

and update with:

conda update bioconductor-rtracklayer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rtracklayer:<tag>

(see bioconductor-rtracklayer/tags for valid values for <tag>)