recipe bioconductor-scale4c

Scale4C is an R/Bioconductor package for scale-space transformation and visualization of 4C-seq data. The scale-space transformation is a multi-scale visualization technique to transform a 2D signal (e.g. 4C-seq reads on a genomic interval of choice) into a tesselation in the scale space (2D, genomic position x scale factor) by applying different smoothing kernels (Gauss, with increasing sigma). This transformation allows for explorative analysis and comparisons of the data’s structure with other samples.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Scale4C.html

License

LGPL-3

Recipe

/bioconductor-scale4c/meta.yaml

package bioconductor-scale4c

(downloads) docker_bioconductor-scale4c

Versions

1.6.0-1, 1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scale4c

and update with:

conda update bioconductor-scale4c

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scale4c:<tag>

(see bioconductor-scale4c/tags for valid values for <tag>)