- recipe bioconductor-scarray
Large-scale single-cell RNA-seq data manipulation with GDS files
- Homepage:
https://bioconductor.org/packages/3.14/bioc/html/SCArray.html
- License:
GPL-3
- Recipe:
Provides large-scale single-cell RNA-seq data manipulation using Genomic Data Structure (GDS) files. It combines dense and sparse matrices stored in GDS files and the Bioconductor infrastructure framework (SingleCellExperiment and DelayedArray) to provide out-of-memory data storage and large-scale manipulation using the R programming language.
- package bioconductor-scarray¶
-
- Versions:
1.2.1-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-biocgenerics
>=0.40.0,<0.41.0
bioconductor-delayedarray
>=0.20.0,<0.21.0
bioconductor-delayedmatrixstats
>=1.16.0,<1.17.0
bioconductor-gdsfmt
>=1.30.0,<1.31.0
bioconductor-iranges
>=2.28.0,<2.29.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
bioconductor-summarizedexperiment
>=1.24.0,<1.25.0
libblas
>=3.8.0,<4.0a0
libgcc-ng
>=10.3.0
liblapack
>=3.8.0,<4.0a0
libstdcxx-ng
>=10.3.0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scarray
and update with:
conda update bioconductor-scarray
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scarray:<tag>
(see bioconductor-scarray/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scarray/README.html)