- recipe bioconductor-scatac.explorer
A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata
- Homepage:
https://bioconductor.org/packages/3.14/data/experiment/html/scATAC.Explorer.html
- License:
Artistic-2.0
- Recipe:
This package provides a tool to search and download a collection of publicly available single cell ATAC-seq datasets and their metadata. scATAC-Explorer aims to act as a single point of entry for users looking to study single cell ATAC-seq data. Users can quickly search available datasets using the metadata table and download datasets of interest for immediate analysis within R.
- package bioconductor-scatac.explorer¶
-
- Versions:
1.0.0-0
- Depends:
bioconductor-biocfilecache
>=2.2.0,<2.3.0
bioconductor-s4vectors
>=0.32.0,<0.33.0
bioconductor-singlecellexperiment
>=1.16.0,<1.17.0
curl
>=7.79.1,<8.0a0
r-base
>=4.1,<4.2.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scatac.explorer
and update with:
conda update bioconductor-scatac.explorer
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scatac.explorer:<tag>
(see bioconductor-scatac.explorer/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scatac.explorer/README.html)