recipe bioconductor-scatac.explorer

A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/scATAC.Explorer.html

License:

Artistic-2.0

Recipe:

/bioconductor-scatac.explorer/meta.yaml

This package provides a tool to search and download a collection of publicly available single cell ATAC-seq datasets and their metadata. scATAC-Explorer aims to act as a single point of entry for users looking to study single cell ATAC-seq data. Users can quickly search available datasets using the metadata table and download datasets of interest for immediate analysis within R.

package bioconductor-scatac.explorer

Versions:

1.4.0-0,  1.0.1-1,  1.0.0-0

Depends:

• bioconductor-biocfilecache >=2.6.0,<2.7.0

• bioconductor-data-packages >=20221106

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• curl

• r-base >=4.2,<4.3.0a0

• r-data.table

• r-matrix

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scatac.explorer

and update with:

conda update bioconductor-scatac.explorer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scatac.explorer:<tag>

(see bioconductor-scatac.explorer/tags for valid values for <tag>)

Download stats

Link to this page

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