- recipe bioconductor-scatedata
Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)
MIT + file LICENSE
SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.
- package bioconductor-scatedata¶
- depends bioconductor-data-packages:
- depends bioconductor-experimenthub:
- depends bioconductor-genomicalignments:
- depends bioconductor-genomicranges:
- depends curl:
- depends r-base:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-scatedata and update with:: mamba update bioconductor-scatedata
To create a new environment, run:
mamba create --name myenvname bioconductor-scatedata
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-scatedata:<tag> (see `bioconductor-scatedata/tags`_ for valid values for ``<tag>``)