recipe bioconductor-scater

Single-Cell Analysis Toolkit for Gene Expression Data in R

Homepage:

https://bioconductor.org/packages/3.14/bioc/html/scater.html

License:

GPL-3

Recipe:

/bioconductor-scater/meta.yaml

Links:

biotools: scater

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

package bioconductor-scater

Versions:

1.22.0-0,  1.20.0-0,  1.18.6-0,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.2-0,  1.10.1-0,  1.10.0-0, 

1.22.0-0,  1.20.0-0,  1.18.6-0,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.12.2-0,  1.10.1-0,  1.10.0-0,  1.8.4-0,  1.6.0-0,  1.4.0-0

Depends:

• bioconductor-beachmat >=2.10.0,<2.11.0

• bioconductor-biocgenerics >=0.40.0,<0.41.0

• bioconductor-biocneighbors >=1.12.0,<1.13.0

• bioconductor-biocparallel >=1.28.0,<1.29.0

• bioconductor-biocsingular >=1.10.0,<1.11.0

• bioconductor-delayedarray >=0.20.0,<0.21.0

• bioconductor-delayedmatrixstats >=1.16.0,<1.17.0

• bioconductor-s4vectors >=0.32.0,<0.33.0

• bioconductor-scuttle >=1.4.0,<1.5.0

• bioconductor-singlecellexperiment >=1.16.0,<1.17.0

• bioconductor-summarizedexperiment >=1.24.0,<1.25.0

• r-base >=4.1,<4.2.0a0

• r-ggbeeswarm

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-matrix

• r-rcolorbrewer

• r-rlang

• r-rtsne

• r-viridis

Required By:

• bioconductor-vaexprs

• bioconductor-conclus

• bioconductor-scdblfinder

• bioconductor-spatiallibd

• bioconductor-splatter

• bioconductor-cellid

• bioconductor-catalyst

• bioconductor-sctreeviz

• bioconductor-cellmixs

• bioconductor-chromscape

• bioconductor-singlecelltk

• seurat-scripts

• bioconductor-tricycle

• bioconductor-mia

• bioconductor-pipecomp

• bioconductor-bayesspace

• bioconductor-peco

• bioconductor-muscat

• bioconductor-netsmooth

• bioconductor-scpipe

• bioconductor-celda

• scater-scripts

• bioconductor-spaniel

• bioconductor-flames

• bioconductor-irisfgm

• bioconductor-distinct

• bioconductor-airpart

• bioconductor-miaviz

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-scater

and update with:

conda update bioconductor-scater

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scater:<tag>

(see bioconductor-scater/tags for valid values for <tag>)

Download stats

Link to this page

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