- recipe bioconductor-scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/scater.html
- License:
GPL-3
- Recipe:
- Links:
biotools: scater
A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.
- package bioconductor-scater¶
-
- Versions:
1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.6-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.2-0
,1.10.1-0
,1.26.0-0
,1.22.0-0
,1.20.0-0
,1.18.6-0
,1.18.0-0
,1.16.0-0
,1.14.0-0
,1.12.2-0
,1.10.1-0
,1.10.0-0
,1.8.4-0
,1.6.0-0
,1.4.0-0
- Depends:
bioconductor-beachmat
>=2.14.0,<2.15.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocneighbors
>=1.16.0,<1.17.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-biocsingular
>=1.14.0,<1.15.0
bioconductor-delayedarray
>=0.24.0,<0.25.0
bioconductor-delayedmatrixstats
>=1.20.0,<1.21.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-scuttle
>=1.8.0,<1.9.0
bioconductor-singlecellexperiment
>=1.20.0,<1.21.0
bioconductor-summarizedexperiment
>=1.28.0,<1.29.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-scater
and update with:
conda update bioconductor-scater
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scater:<tag>
(see bioconductor-scater/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scater/README.html)