-
recipe
bioconductor-scater¶ A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.
- Homepage
- License
GPL-3
- Recipe
- Links
biotools: scater
-
package
bioconductor-scater¶ 
- Versions
1.10.1-0, 1.10.0-0, 1.8.4-0, 1.6.0-0, 1.4.0-0
- Depends bioconductor-beachmat
>=1.4.0,<1.5.0
- Depends bioconductor-biocgenerics
>=0.28.0,<0.29.0
- Depends bioconductor-biocparallel
>=1.16.0,<1.17.0
- Depends bioconductor-delayedarray
>=0.8.0,<0.9.0
- Depends bioconductor-delayedmatrixstats
>=1.4.0,<1.5.0
- Depends bioconductor-rhdf5lib
>=1.4.0,<1.5.0
- Depends bioconductor-s4vectors
>=0.20.0,<0.21.0
- Depends bioconductor-singlecellexperiment
>=1.4.0,<1.5.0
- Depends bioconductor-summarizedexperiment
>=1.12.0,<1.13.0
- Depends libgcc-ng
>=7.3.0
- Depends libstdcxx-ng
>=7.3.0
- Depends r-base
>=3.5.1,<3.5.2.0a0
- Depends r-dplyr
- Depends r-ggbeeswarm
- Depends r-ggplot2
- Depends r-matrix
- Depends r-plyr
- Depends r-rcpp
>=0.12.14
- Depends r-reshape2
- Depends r-viridis
- Requirements
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-scater
and update with:
conda update bioconductor-scater
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-scater:<tag>
(see bioconductor-scater/tags for valid values for
<tag>)
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-scater/README.html)