recipe bioconductor-scater

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/scater.html

License

GPL-3

Recipe

/bioconductor-scater/meta.yaml

Links

biotools: scater

package bioconductor-scater

(downloads) docker_bioconductor-scater

Versions

1.10.1-0, 1.10.0-0, 1.8.4-0, 1.6.0-0, 1.4.0-0

Depends bioconductor-beachmat

>=1.4.0,<1.5.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-delayedarray

>=0.8.0,<0.9.0

Depends bioconductor-delayedmatrixstats

>=1.4.0,<1.5.0

Depends bioconductor-rhdf5lib

>=1.4.0,<1.5.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-singlecellexperiment

>=1.4.0,<1.5.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-dplyr

Depends r-ggbeeswarm

Depends r-ggplot2

Depends r-matrix

Depends r-plyr

Depends r-rcpp

>=0.12.14

Depends r-reshape2

Depends r-viridis

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-scater

and update with:

conda update bioconductor-scater

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-scater:<tag>

(see bioconductor-scater/tags for valid values for <tag>)